Here is a list of all files with brief descriptions:

[detail level 1234]

doc
▼ pyoculus
▼ integrators
__init__.py
base_integrator.py	Contains base class of ODE integrator
rk_integrator.py	Contains the class of RK ODE integrator
sdc_integrator.py
▼ irrationals
__init__.py
continued_fraction.py	Contains functions related to the continued fraction expansion
▼ problems
▼ SPECfortran
pybasefn.f90	Fortran module that computes the radial basis functions
pybfield.f90
pycoords.f90	Fortran module for SPEC problems, computing geometry relevant quantities
pyPJH.f90	Fortran module for SPEC Pressure Jump Hamiltonian problems
pyvariables.f90	A MODULE that keeps all the global SPECvariables for other interfaced fortran SUBROUTINE
__init__.py
base_problem.py	Containing base problem class for pyoculus ODE solver
bfield_problem.py	Containing a problem class with magnetic fields
cartesian_bfield.py	Containing a class for pyoculus ODE solver that deals with magnetic field given in Cartesian
cylindrical_bfield.py	Containing a class for pyoculus ODE solver that deals with magnetic field given in Cylindrical coordinates
cylindrical_problem.py	Containing cylindrical problem class for pyoculus ODE solver
interpolate_coordinates.py	: class for keeping interpolating coordinates between a few surfaces
m3dc1_bfield.py	Containing the problem class for pyoculus ODE solver to work on M3DC1 magnetic field
qfm_bfield.py	Setup the magnetic field system - using the Quadratic minimising surfaces coordinates
simsgeo_biot_savart.py	Containing a class for pyoculus ODE solver that deals with Simsgeo B field
spec_bfield.py
spec_pjh.py	Setup the SPEC Pressure Jump Hamiltonian system for ODE solver
spec_problem.py	Setup the Abstract SPEC class for ODE solver
toroidal_bfield.py	Containing a problem class with magnetic fields in two cyclical coordinates for pyoculus ODE solver
toroidal_problem.py	Containing a problem class with two cyclical coordinates for pyoculus ODE solver
two_waves.py	Perturbed slab problem
▼ solvers
__init__.py
base_solver.py	Contains base class for solvers
fixed_point.py	Class for finding fixed points
flux_surface_gr.py	A class for finding flux surfaces using Greene's residue method
lyapunov_exponent.py	Containing a class for computing the Lyapunov Exponent
manifolds.py
poincare_plot.py	: class for generating the Poincare Plot
qfm.py	: class for generating the (weighted) Quadratic Flux Minimising (QFM) surfaces
__init__.py