Here is a list of all functions with links to the classes they belong to:

- _ -

• __init__() : pyoculus.integrators.base_integrator.BaseIntegrator, pyoculus.integrators.rk_integrator.RKIntegrator, pyoculus.problems.base_problem.BaseProblem, pyoculus.problems.bfield_problem.BfieldProblem, pyoculus.problems.cartesian_bfield.CartesianBfield, pyoculus.problems.cylindrical_bfield.CylindricalBfield, pyoculus.problems.cylindrical_problem.CylindricalProblem, pyoculus.problems.interpolate_coordinates.SurfacesToroidal, pyoculus.problems.interpolate_coordinates.SurfacesToroidal.CoordsOutput, pyoculus.problems.m3dc1_bfield.M3DC1Bfield, pyoculus.problems.qfm_bfield.QFMBfield, pyoculus.problems.simsgeo_biot_savart.SimsgeoBiotSavart, pyoculus.problems.spec_bfield.SPECBfield, pyoculus.problems.spec_pjh.SPECPJH, pyoculus.problems.spec_problem.SPECProblem, pyoculus.problems.toroidal_bfield.ToroidalBfield, pyoculus.problems.toroidal_problem.ToroidalProblem, pyoculus.problems.two_waves.TwoWaves, pyoculus.solvers.base_solver.BaseSolver, pyoculus.solvers.base_solver.BaseSolver.OutputData, pyoculus.solvers.fixed_point.FixedPoint, pyoculus.solvers.flux_surface_gr.FluxSurfaceGR, pyoculus.solvers.lyapunov_exponent.LyapunovExponent, pyoculus.solvers.poincare_plot.PoincarePlot, pyoculus.solvers.qfm.QFM
• _inv_Jacobian() : pyoculus.problems.cartesian_bfield.CartesianBfield
• _newton_method_1() : pyoculus.solvers.fixed_point.FixedPoint
• _newton_method_2() : pyoculus.solvers.fixed_point.FixedPoint
• _newton_method_3() : pyoculus.solvers.fixed_point.FixedPoint
• _pack_dof() : pyoculus.solvers.qfm.QFM
• _run_poincare() : pyoculus.solvers.poincare_plot.PoincarePlot
• _straighten_boundary() : pyoculus.solvers.qfm.QFM
• _test_fun() : pyoculus.integrators.rk_integrator.RKIntegrator
• _unpack_dof() : pyoculus.solvers.qfm.QFM

- a -

• action() : pyoculus.solvers.qfm.QFM
• action_gradient() : pyoculus.solvers.qfm.QFM
• action_gradient_jacobi() : pyoculus.solvers.qfm.QFM
• add_surface() : pyoculus.problems.interpolate_coordinates.SurfacesToroidal

- b -

• B() : pyoculus.problems.bfield_problem.BfieldProblem, pyoculus.problems.m3dc1_bfield.M3DC1Bfield, pyoculus.problems.qfm_bfield.QFMBfield, pyoculus.problems.simsgeo_biot_savart.SimsgeoBiotSavart, pyoculus.problems.spec_bfield.SPECBfield, pyoculus.problems.two_waves.TwoWaves
• B_many() : pyoculus.problems.bfield_problem.BfieldProblem, pyoculus.problems.qfm_bfield.QFMBfield, pyoculus.problems.spec_bfield.SPECBfield, pyoculus.problems.two_waves.TwoWaves

- c -

• compute() : pyoculus.solvers.fixed_point.FixedPoint, pyoculus.solvers.flux_surface_gr.FluxSurfaceGR, pyoculus.solvers.lyapunov_exponent.LyapunovExponent, pyoculus.solvers.poincare_plot.PoincarePlot
• compute_iota() : pyoculus.solvers.poincare_plot.PoincarePlot
• compute_q() : pyoculus.solvers.poincare_plot.PoincarePlot
• compute_tflux() : pyoculus.solvers.qfm.QFM
• construct_interpolant() : pyoculus.problems.interpolate_coordinates.SurfacesToroidal
• construct_qfms() : pyoculus.solvers.qfm.QFM
• contra_vector_transform() : pyoculus.problems.interpolate_coordinates.SurfacesToroidal
• convert_coords() : pyoculus.problems.base_problem.BaseProblem, pyoculus.problems.qfm_bfield.QFMBfield, pyoculus.problems.spec_bfield.SPECBfield, pyoculus.problems.spec_pjh.SPECPJH, pyoculus.problems.toroidal_problem.ToroidalProblem, pyoculus.problems.two_waves.TwoWaves
• copy() : pyoculus.integrators.base_integrator.BaseIntegrator, pyoculus.integrators.rk_integrator.RKIntegrator

- d -

• dBdX() : pyoculus.problems.bfield_problem.BfieldProblem, pyoculus.problems.qfm_bfield.QFMBfield, pyoculus.problems.simsgeo_biot_savart.SimsgeoBiotSavart, pyoculus.problems.spec_bfield.SPECBfield, pyoculus.problems.two_waves.TwoWaves
• dBdX_many() : pyoculus.problems.bfield_problem.BfieldProblem, pyoculus.problems.qfm_bfield.QFMBfield, pyoculus.problems.spec_bfield.SPECBfield, pyoculus.problems.two_waves.TwoWaves

- f -

• f() : pyoculus.problems.base_problem.BaseProblem, pyoculus.problems.cylindrical_problem.CylindricalProblem, pyoculus.problems.spec_pjh.SPECPJH, pyoculus.problems.toroidal_bfield.ToroidalBfield, pyoculus.problems.toroidal_problem.ToroidalProblem
• f_RZ() : pyoculus.problems.cartesian_bfield.CartesianBfield, pyoculus.problems.cylindrical_bfield.CylindricalBfield, pyoculus.problems.cylindrical_problem.CylindricalProblem
• f_RZ_tangent() : pyoculus.problems.cartesian_bfield.CartesianBfield, pyoculus.problems.cylindrical_problem.CylindricalProblem
• f_tangent() : pyoculus.problems.base_problem.BaseProblem, pyoculus.problems.cylindrical_problem.CylindricalProblem, pyoculus.problems.spec_pjh.SPECPJH, pyoculus.problems.toroidal_bfield.ToroidalBfield, pyoculus.problems.toroidal_problem.ToroidalProblem

- g -

• get_coords() : pyoculus.problems.interpolate_coordinates.SurfacesToroidal
• get_covariant_field() : pyoculus.problems.spec_pjh.SPECPJH
• get_solution() : pyoculus.integrators.base_integrator.BaseIntegrator

- i -

• integrate() : pyoculus.integrators.base_integrator.BaseIntegrator, pyoculus.integrators.rk_integrator.RKIntegrator
• is_successful() : pyoculus.solvers.base_solver.BaseSolver

- j -

• jacobi_transform() : pyoculus.problems.interpolate_coordinates.SurfacesToroidal

- m -

• metric_transform() : pyoculus.problems.interpolate_coordinates.SurfacesToroidal

- p -

• plot() : pyoculus.problems.interpolate_coordinates.SurfacesToroidal, pyoculus.solvers.fixed_point.FixedPoint, pyoculus.solvers.flux_surface_gr.FluxSurfaceGR, pyoculus.solvers.lyapunov_exponent.LyapunovExponent, pyoculus.solvers.poincare_plot.PoincarePlot
• plot_iota() : pyoculus.solvers.poincare_plot.PoincarePlot
• plot_q() : pyoculus.solvers.poincare_plot.PoincarePlot
• plot_residue() : pyoculus.solvers.flux_surface_gr.FluxSurfaceGR

- r -

• read_surfaces_from_file() : pyoculus.problems.interpolate_coordinates.SurfacesToroidal
• remove_surface() : pyoculus.problems.interpolate_coordinates.SurfacesToroidal
• replace_surface() : pyoculus.problems.interpolate_coordinates.SurfacesToroidal

- s -

• set_axis() : pyoculus.problems.cylindrical_problem.CylindricalProblem
• set_initial_value() : pyoculus.integrators.base_integrator.BaseIntegrator, pyoculus.integrators.rk_integrator.RKIntegrator
• set_k() : pyoculus.problems.two_waves.TwoWaves
• set_PJH_parameters() : pyoculus.problems.spec_pjh.SPECPJH
• straighten_boundary() : pyoculus.solvers.qfm.QFM

- w -

• write_surfaces_to_file() : pyoculus.problems.interpolate_coordinates.SurfacesToroidal